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    • Genome and transcriptome assembly
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Student Projects

  • Assessing patterns associated with cryptic splicing using Nanopore direct RNA datasets

  • Viral genome analysis from wastewater sequencing data

  • Benchmarking viral genome assembly tools

  • Bacterial genome assembly in the presence of structural variation

  • Can we detect immunotherapy side- effects from a blood test?

  • Genome Graph Sequence Alignmentt and Mismatch Detection

  • High-performance Interactive Tree Visualization

  • Development of multiple whole genome species alignments to investigate the radiation of Bovidae

  • Evolutionary insights into T cell receptor germline alleles

  • Scoring clones of B cells in RNA-Seq data

  • Comparison of pairwise long read aligners

  • Mining the tumor microbiome for novel treatment strategies

  • The sequencing quality atlas

  • Evaluating the phylogenetic accuracy of Spoligotyping for M.Tuberculosis epidemiology

  • Annotating genes in noisy reads through deep learning

  • Automated validation M.Tuberculosis whole genome sequencing pipelines

  • Linear mixed models for bacterial strain identification in metagenomic datasets

  • High-throughput quality assessment of sequencing data

  • De novo haplotype reconstruction of polyploid plants

  • Pangenome read alignment and variant calling

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Elektrotechniek & Support

Elektrotechniek, Wiskunde & Support

Gebouw 36
Mekelweg 4
2628 CD Delft
Tel: +31 (0)15 27 89803

Wiskunde & Informatica

Informatica & Support
 

Gebouw 28
Van Mourik Broekmanweg 6
2628 XE Delft
Tel: +31 (0)15 27 89818

Home van TU Delft
  • Research
    • Pangenomes
    • Genome and transcriptome assembly
    • Computational Neurobiology
    • Single-cell omics
    • Aging research
    • Microbial genomics
    • Variant prediction and annotation
    • Functional genomics
    • Molecular diagnostics
    • Cancer research
  • Publications
  • News
  • Software
  • People
  • Education
  • Student Projects
  • Contact
  • Internal